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Epigenetics and Nuclear Signaling Chromatin Modifying Enzymes Methylation Lysine methylation

Anti-CLLD8/SETDB2 antibody (ab5517)

Price and availability

288 134 ₸

Availability

Order now and get it on Thursday February 25, 2021

Anti-CLLD8/SETDB2 antibody (ab5517)
  • ChIP - Anti-Histone H3 antibody - Nuclear Loading Control and ChIP Grade (ab1791)
  • ChIP - Anti-Histone H3 antibody - Nuclear Loading Control and ChIP Grade (ab1791)
  • ChIP - Anti-Histone H3 antibody - Nuclear Loading Control and ChIP Grade (ab1791)
  • ChIP - Anti-Histone H3 antibody - Nuclear Loading Control and ChIP Grade (ab1791)
  • ChIP - Anti-Histone H3 antibody - Nuclear Loading Control and ChIP Grade (ab1791)

Key features and details

  • Rabbit polyclonal to CLLD8/SETDB2
  • Suitable for: WB, ICC/IF
  • Reacts with: Human, Spodoptera frugiperda (SF9 cells)
  • Isotype: IgG

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Overview

  • Product name

    Anti-CLLD8/SETDB2 antibody
    See all CLLD8/SETDB2 primary antibodies
  • Description

    Rabbit polyclonal to CLLD8/SETDB2
  • Host species

    Rabbit
  • Tested applications

    Suitable for: WB, ICC/IFmore details
  • Species reactivity

    Reacts with: Human, Spodoptera frugiperda (SF9 cells)
  • Immunogen

    Synthetic peptide corresponding to Human CLLD8/SETDB2 aa 550-650 conjugated to keyhole limpet haemocyanin.
    Database link: Q96T68
    (Peptide available as ab24398)

  • General notes

    Our collaborator on this project has found that the antibody works poorly in WB.

Properties

  • Form

    Liquid
  • Storage instructions

    Shipped at 4°C. Upon delivery aliquot and store at -20°C or -80°C. Avoid repeated freeze / thaw cycles.
  • Storage buffer

    pH: 7.40
    Preservative: 0.02% Sodium azide
    Constituent: PBS

    Batches of this product that have a concentration
  • Concentration information loading...
  • Purity

    Immunogen affinity purified
  • Clonality

    Polyclonal
  • Isotype

    IgG
  • Research areas

    • Epigenetics and Nuclear Signaling
    • Chromatin Modifying Enzymes
    • Methylation
    • Lysine methylation

Associated products

  • Compatible Secondaries

    • Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) (ab150077)
    • Goat Anti-Rabbit IgG H&L (HRP) (ab205718)
  • Isotype control

    • Rabbit IgG, polyclonal - Isotype Control (ChIP Grade) (ab171870)
  • Recombinant Protein

    • Recombinant Human CLLD8/SETDB2 protein (ab169554)

Applications

Our Abpromise guarantee covers the use of ab5517 in the following tested applications.

The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user.

Application Abreviews Notes
WB Use at an assay dependent concentration. Predicted molecular weight: 82 kDa.
ICC/IF Use at an assay dependent concentration.

Target

  • Function

    Histone methyltransferase involved in left-right axis specification in early development and mitosis. Specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). H3K9me3 is a specific tag for epigenetic transcriptional repression that recruits HP1 (CBX1, CBX3 and/or CBX5) proteins to methylated histones. Contributes to H3K9me3 in both the interspersed repetitive elements and centromere-associated repeats. Plays a role in chromosome condensation and segregation during mitosis.
  • Tissue specificity

    Ubiquitous. Highest expression in heart, testis and ovary.
  • Sequence similarities

    Belongs to the histone-lysine methyltransferase family.
    Contains 1 MBD (methyl-CpG-binding) domain.
    Contains 1 pre-SET domain.
    Contains 1 SET domain.
  • Cellular localization

    Nucleus. Chromosome.
  • Target information above from: UniProt accession Q96T68 The UniProt Consortium
    The Universal Protein Resource (UniProt) in 2010
    Nucleic Acids Res. 38:D142-D148 (2010) .

    Information by UniProt
  • Database links

    • Entrez Gene: 83852 Human
    • Omim: 607865 Human
    • SwissProt: Q96T68 Human
    • Unigene: 631789 Human
    • Alternative names

      • C13orf4 antibody
      • Chromosome 13 open reading frame 4 antibody
      • Chronic lymphocytic leukemia deletion region 8 antibody
      • Chronic lymphocytic leukemia deletion region gene 8 antibody
      • Chronic lymphocytic leukemia deletion region gene 8 protein antibody
      • Clld8 antibody
      • CLLL8 antibody
      • Gm293 antibody
      • H3-K9-HMTase antibody
      • Histone H3-K9 methyltransferase antibody
      • Histone-lysine N-methyltransferase SETDB2 antibody
      • KMT1F antibody
      • Lysine N-methyltransferase 1F antibody
      • Probable histone-lysine N-methyltransferase H3 lysine-9 specific antibody
      • SEB2 antibody
      • SET domain bifurcated 2 antibody
      • SET domain protein, bifurcated, 2 antibody
      • SETB2_HUMAN antibody
      • Setdb2 antibody
      see all

    Images

    • Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Anti-CLLD8/SETDB2 antibody (ab5517) at 1 µg/ml + Recombinant Human CLLD8/SETDB2 protein (ab169554) at 0.01 µg

      Secondary
      Goat Anti-Rabbit IgG H&L (HRP) (ab97051) at 1/10000 dilution

      Developed using the ECL technique.

      Performed under reducing conditions.

      Predicted band size: 82 kDa
      Additional bands at: 120 kDa (possible tagged protein)


      Exposure time: 10 seconds


      ab5517 recognises a band corresponding to the tagged CLLD8/SETB2 at approximately 120 kDa.

       

      Abcam recommends using milk as the blocking agent. Abcam welcomes customer feedback and would appreciate any comments regarding this product and the data presented above.

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)

      ICC/IF image of ab5517 stained MCF-7 cells. The cells were 4% formaldehyde fixed (10 min) and then incubated in 1%BSA / 10% normal Goat serum / 0.3M glycine in 0.1% PBS-Tween for 1h to permeabilise the cells and block non-specific protein-protein interactions. The cells were then incubated with the antibody ab5517 at 5ug/ml overnight at +4°C. The secondary antibody (green) was DyLight® 488 Goat anti Rabbit (ab96899) IgG (H+L) used at a 1/250 dilution for 1h. Alexa Fluor® 594 WGA was used to label plasma membranes (red) at a 1/200 dilution for 1h. DAPI was used to stain the cell nuclei (blue) at a concentration of 1.43µM.

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)This image is courtesy of Genevieve Fourel, Grenoble

      Left: Endogenous CLLD8

      Detection using indirect fluorescence of the signal corresponding to endogenous CLLD8 in 293T cells. Cells fixed using 4% formaldehyde, blocked with PBS containing 3% milk and 0.5% Triton X-100, incubated for 1 hour at 37 °C using a 1/50 dilution of antibody ab5517. Cells were then washed 3 times and incubated for 1 hour at 37 °C with a goat anti-rabbit secondary antibody (1/500 dilution) coupled to Alexa Fluor 555 (Molecular Probes). Following 3 more washes, cells were stained with DAPI and mounted with Vectashield.

      Top: DAPI
      Bottom: ab5517


      Right: Overexpressed CLLD8

      Detection using indirect fluorescence of the signal corresponding to staining with anti-FLAG mouse antibody (top) and an antibody (ab5517) against CLLD8 (middle) in 293T cells. 293T cells were transfected with vectors for overexpression of flagged CLLD8 using Lipofectamine 2000 transfection procedure (Invitrogen). Cells were fixed 48 hours post-tra

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)This image is courtesy of Genevieve Fourel, Grenoble

      Detection using indirect fluorescence of the signal corresponding to endogenous CLLD8 in 293T cells. Using Lipofectamine 2000 (Invitrogen), cells were transfected with either a control shRNA directed against luciferase (left, SiRluc) or a specific siRNA directed against CLLD8 (right). 48 hours post-transfection, cells were fixed, blocked, and incubated with a 1:50 dilution of ab5517 at 37 °C for 1 hour. Cells were then washed 3 times and incubated at 37 °C for 1 hour with a 1/500 dilution of goat anti-rabbit antibody coupled with Alexa Fluor 555 (Molecular Probes). Following 3 further washes cells were stained with DAPI and mounted with Vectashield.

      Antibody signals were extinguished when a specific RNAi was used. The few cells which retained a signal were presumably not transfected.   

       

    • Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      All lanes : Anti-CLLD8/SETDB2 antibody (ab5517) at 1 µg/ml

      Lane 1 : Sf21 cells infected by baculovirus containing FLAG-CLLD8 gene at 10 µg
      Lane 2 : Sf21 cells infected by baculovirus containing FLAG-CLLD8 gene at 20 µg
      Lane 3 : non-infected Sf21 cells at 10 µg
      Lane 4 : non-infected Sf21 cells at 20 µg
      Lane 5 : Sf21 infected by baculovirus containing FLAG-CLLD8 gene at 10 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 6 : Sf21 infected by baculovirus containing FLAG-CLLD8 gene at 20 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 7 : non-infected Sf21 cells at 10 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 8 : non-infected Sf21 cells at 20 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml

      Predicted band size: 82 kDa
      Observed band size: 110 kDa
      why is the actual band size different from the predicted?
      Additional bands at: 22 kDa (possible non-specific binding), 90 kDa (possible non-specific binding)



      ab5517 recognises a band corresponding to FLAG-tagged CLLD8/SETB2 at approximately 110 kDa in Sf21 cells infected by baculovirus expressing CLLD8/SETDB2 (lanes1-2). This is larger than the predicated band size (81 kDa) due to the addition of the FLAG tag.

      ab5517 does not detect a band in uninfected sf21 cells (lanes3-4) or following blocking studies using the immunizing peptide (lanes5-6).

      There appears to be a ladder of proteins recognised by ab5517 (lanes1-2), which could be attributed to degradation products.

    Protocols

    • Immunohistochemistry protocols
    • Immunocytochemistry & immunofluorescence protocols

    Click here to view the general protocols

    Datasheets and documents

    • Datasheet
  • References (3)

    Publishing research using ab5517? Please let us know so that we can cite the reference in this datasheet.

    ab5517 has been referenced in 3 publications.

    • Nishikawaji T  et al. Oncogenic roles of the SETDB2 histone methyltransferase in gastric cancer. Oncotarget 7:67251-67265 (2016). IHC . PubMed: 27572307
    • Hogarth CA  et al. Identification and expression of potential regulators of the mammalian mitotic-to-meiotic transition. Biol Reprod 84:34-42 (2011). WB, IHC-P ; Mouse . PubMed: 20826732
    • Falandry C  et al. CLLD8/KMT1F is a lysine methyltransferase that is important for chromosome segregation. J Biol Chem 285:20234-41 (2010). WB, ICC/IF ; Human . PubMed: 20404330

    Images

    • Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Anti-CLLD8/SETDB2 antibody (ab5517) at 1 µg/ml + Recombinant Human CLLD8/SETDB2 protein (ab169554) at 0.01 µg

      Secondary
      Goat Anti-Rabbit IgG H&L (HRP) (ab97051) at 1/10000 dilution

      Developed using the ECL technique.

      Performed under reducing conditions.

      Predicted band size: 82 kDa
      Additional bands at: 120 kDa (possible tagged protein)


      Exposure time: 10 seconds


      ab5517 recognises a band corresponding to the tagged CLLD8/SETB2 at approximately 120 kDa.

       

      Abcam recommends using milk as the blocking agent. Abcam welcomes customer feedback and would appreciate any comments regarding this product and the data presented above.

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)

      ICC/IF image of ab5517 stained MCF-7 cells. The cells were 4% formaldehyde fixed (10 min) and then incubated in 1%BSA / 10% normal Goat serum / 0.3M glycine in 0.1% PBS-Tween for 1h to permeabilise the cells and block non-specific protein-protein interactions. The cells were then incubated with the antibody ab5517 at 5ug/ml overnight at +4°C. The secondary antibody (green) was DyLight® 488 Goat anti Rabbit (ab96899) IgG (H+L) used at a 1/250 dilution for 1h. Alexa Fluor® 594 WGA was used to label plasma membranes (red) at a 1/200 dilution for 1h. DAPI was used to stain the cell nuclei (blue) at a concentration of 1.43µM.

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517) This image is courtesy of Genevieve Fourel, Grenoble

      Left: Endogenous CLLD8

      Detection using indirect fluorescence of the signal corresponding to endogenous CLLD8 in 293T cells. Cells fixed using 4% formaldehyde, blocked with PBS containing 3% milk and 0.5% Triton X-100, incubated for 1 hour at 37 °C using a 1/50 dilution of antibody ab5517. Cells were then washed 3 times and incubated for 1 hour at 37 °C with a goat anti-rabbit secondary antibody (1/500 dilution) coupled to Alexa Fluor 555 (Molecular Probes). Following 3 more washes, cells were stained with DAPI and mounted with Vectashield.

      Top: DAPI
      Bottom: ab5517


      Right: Overexpressed CLLD8

      Detection using indirect fluorescence of the signal corresponding to staining with anti-FLAG mouse antibody (top) and an antibody (ab5517) against CLLD8 (middle) in 293T cells. 293T cells were transfected with vectors for overexpression of flagged CLLD8 using Lipofectamine 2000 transfection procedure (Invitrogen). Cells were fixed 48 hours post-tra

    • Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517)
      Immunocytochemistry/ Immunofluorescence - Anti-CLLD8/SETDB2 antibody (ab5517) This image is courtesy of Genevieve Fourel, Grenoble

      Detection using indirect fluorescence of the signal corresponding to endogenous CLLD8 in 293T cells. Using Lipofectamine 2000 (Invitrogen), cells were transfected with either a control shRNA directed against luciferase (left, SiRluc) or a specific siRNA directed against CLLD8 (right). 48 hours post-transfection, cells were fixed, blocked, and incubated with a 1:50 dilution of ab5517 at 37 °C for 1 hour. Cells were then washed 3 times and incubated at 37 °C for 1 hour with a 1/500 dilution of goat anti-rabbit antibody coupled with Alexa Fluor 555 (Molecular Probes). Following 3 further washes cells were stained with DAPI and mounted with Vectashield.

      Antibody signals were extinguished when a specific RNAi was used. The few cells which retained a signal were presumably not transfected.   

       

    • Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      Western blot - Anti-CLLD8/SETDB2 antibody (ab5517)
      All lanes : Anti-CLLD8/SETDB2 antibody (ab5517) at 1 µg/ml

      Lane 1 : Sf21 cells infected by baculovirus containing FLAG-CLLD8 gene at 10 µg
      Lane 2 : Sf21 cells infected by baculovirus containing FLAG-CLLD8 gene at 20 µg
      Lane 3 : non-infected Sf21 cells at 10 µg
      Lane 4 : non-infected Sf21 cells at 20 µg
      Lane 5 : Sf21 infected by baculovirus containing FLAG-CLLD8 gene at 10 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 6 : Sf21 infected by baculovirus containing FLAG-CLLD8 gene at 20 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 7 : non-infected Sf21 cells at 10 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml
      Lane 8 : non-infected Sf21 cells at 20 µg with Human CLLD8/SETDB2 peptide (ab24398) at 1 µg/ml

      Predicted band size: 82 kDa
      Observed band size: 110 kDa
      why is the actual band size different from the predicted?
      Additional bands at: 22 kDa (possible non-specific binding), 90 kDa (possible non-specific binding)



      ab5517 recognises a band corresponding to FLAG-tagged CLLD8/SETB2 at approximately 110 kDa in Sf21 cells infected by baculovirus expressing CLLD8/SETDB2 (lanes1-2). This is larger than the predicated band size (81 kDa) due to the addition of the FLAG tag.

      ab5517 does not detect a band in uninfected sf21 cells (lanes3-4) or following blocking studies using the immunizing peptide (lanes5-6).

      There appears to be a ladder of proteins recognised by ab5517 (lanes1-2), which could be attributed to degradation products.

    Please note: All products are "FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES"
    For licensing inquiries, please contact partnerships@abcam.com

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